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TCNG: The Cancer Network Galaxy
Tcng

TCNG The Cancer Network Galaxy0.14

Database of Cancer Gene Networks from Public Gene Expression Data

Gene Set

GSE12777_top500tf

DescriptionGene expression profiling of 51 human breast cancer cell lines
Gene Set MethodTop 500 high variable transcription factor genes
Gene Set SourceGEO : GSE12777 (See on GEO)
Number of Nodes500

Network Nodes in the Gene Set

TFAP2B
ETS1
ZIC1
GATA3
SNAI2
PAX6
ANKRD30A
ETV1
EHF
SIM1
WT1
HOXB2
FOSL1
SPDEF
HOXA9
FOXA1
PGR
ZEB1
LEF1
ELF5
CDKN2A
IRX2
MKX
TBX1
SOX11
GLIS3
ETV5
TWIST1
HOXA1
HOXA10
TCF4
ARNTL2
ASCL2
MSX1
WNT5A
HOXB6
NFIX
BHLHE41
SATB1
ZEB2
EBF1
RB1
FOS
ZNF135
BCL11B
ARNT2
SOX2
ZIC2
HEY2
RUNX3
ISL2
CSRNP3
PBX1
GATA5
MYCN
ESR1
FOXP2
SOX9
RUNX2
FOXG1
C12orf28
MECOM
MMP14
ZSCAN18
CREB3L1
HOXA13
PPARG
MAFB
PRRX1
LHX2
FOXC1
NFIA
ZNF167
MSX2
SCML1
TBX3
SALL1
SATB2
PLAG1
HOXB7
HNF4G
IRX1
NFATC2
PLSCR1
FOXD1
FOXQ1
SOX15
HMGA2
NR5A2
DLX6
NR0B1
NPAS2
MESP1
SMAD3
PGBD1
CSDA
LZTS1
TFEC
HOXB13
DLX1
ELF3
SLC26A3
ZNF238
TRIM29
GATA4
SOX8
TBX2
PITX1
ARX
MEF2C
IRX5
NKX2-5
TRIM22
FOXF2
IRF6
POU4F1
IRX4
HOXA3
BATF
NR2F1
CREB5
HOXA11
POU2F3
EN1
LHX8
GRHL3
CEBPA
LHX9
TP53
HLF
BNC1
TFCP2L1
DLX2
ZNF85
HOXA7
MEOX2
NFIB
HR
STAT6
PROX1
HEY1
FOXE1
KLF12
ZNF215
AR
ZFPM2
SOX6
HOXB3
PEG3
ASCL1
NR3C1
MEIS2
HOXA5
ZFP42
ESRRG
PBX4
ETV4
TEAD2
RORC
CITED1
SIX3
GAS7
TRPS1
EN2
EGR3
HOXA2
GLI3
EGR1
HOPX
TSHZ2
NR2F2
HOXA4
LHX1
GRHL2
TFCP2
NFE2L3
RARA
NKX2-1
TP63
VAV1
SOX30
MAF
EGR2
MAFF
CBFA2T3
FLI1
ZNF117
ONECUT2
RORA
PITX2
PPARA
FOXL2
NR3C2
PAX8
FOXA2
FOXO1
IRX3
CEBPD
DLX3
GATA6
OTX2
ATF2
ZNF93
TFAP2A
BARX1
OVOL1
ETS2
MYT1
SOX10
RUNX1T1
FOXL1
CUX2
HIC1
PRRX2
ISL1
SOX5
SIX1
TCF7
EGR4
MBD1
TFAP2C
HDX
KLF2
CREB3L4
FOSL2
FOXD3
POU1F1
TSHZ3
GATAD2B
LMO4
EPAS1
PAX3
ZNF157
ZNF91
TWIST2
L3MBTL4
ZHX2
HES6
FOXA3
ZNF83
NFATC1
ETV7
ZNF80
ZNF396
ZSCAN4
RCOR1
MGA
NKX6-2
GBX2
ZSCAN12
MEIS1
NKX2-3
TAF4
SMAD9
THRB
PRDM1
RCAN1
HOXC13
HOXD11
GLI2
MSC
POU3F2
SPIC
TSC22D3
TAL1
HMGA1
PPARD
HES5
NPAT
RORB
ELK3
ZNF287
IRF7
ERG
SIX2
SIM2
ZSCAN23
HOXC10
HOXD13
POU6F1
STRN3
ELF4
TCF7L1
NEUROD1
HHEX
MYT1L
IKZF1
BHLHE40
VTN
MEIS3
AFF4
KLF15
ENO1
ZNF323
DMRT2
NR1H4
IRF4
ZNF397
BTG2
SOX7
ST18
TEF
FOXO6
NR4A2
NFATC4
HSF5
KLF5
ZNF175
TBX22
SMAD2
HOXC5
ZNF131
MSRB2
SOX4
NPAS1
GSC2
TULP4
ZFP36L1
HOXB8
HOXD4
EMX1
CREM
ESX1
ZNF132
RARG
FOXI1
FOXJ1
HMX2
ELK4
STAT2
IKZF3
FOXC2
TLX3
MTA2
KLF4
KLF6
MLLT10
MXD1
ZFHX4
CTBP1
MNX1
ZNF24
RUNX1
TP73
E2F8
LASS5
HESX1
LMX1B
NANOGNB
E2F5
PKNOX2
ATOH1
ALX1
IRF1
TCF21
OLIG2
FOSB
C11orf9
RFX3
HOXC12
MLL
AHR
C2orf3
ZNF444
TRERF1
PTH
NKX3-2
ZIC5
ZNF165
NFAT5
TCF12
PRDM2
KDM5A
TBX5
JUN
FOXO3
LHX6
MESP2
RFXAP
ZKSCAN3
NEUROD2
PAX4
HNRNPAB
SOX1
TEAD1
ZSCAN2
HOXD10
HIF3A
SMAD6
FUBP1
MEOX1
SOX17
HOXD3
ZIC3
SNAI3
FOXK2
MYC
PBX3
ZFHX3
RERE
ZNF81
VSX1
SMAD1
ZNF639
SOX18
THRA
RARB
DMBX1
ZNF3
HOXD8
BLZF1
POU3F1
SOX13
ZNF207
POU3F3
NKX2-8
ESRRB
SOX21
BACH2
BCL6
XBP1
NEUROG1
GATA2
KLF9
NR4A3
NFE2
TFDP2
ZHX3
TBX19
CITED2
HMX1
KDM5B
STAT5B
SMAD4
FOXP1
TADA3
ZXDC
TAF4B
NRL
ALX3
KCNH8
ZNF134
CREB3L3
CREBZF
NFKB2
HOXB9
MEF2D
MITF
NFE2L2
SCAND1
TCF7L2
ZNF496
HMG20B
FOXP3
MEIS3P1
NANOG
MAFG
MYF5
MYNN
SCAND2
SIN3A
HOXB4
ZNF90
IRF9
MTA3
TADA2A
NKX3-1
TFEB
MLXIPL
SALL2
ATF6B
ZNF18
ZNF256
GATAD2A
KLF16
NFYA
ZSCAN20
CREBBP
ETV6
TSC22D2
ONECUT1
ALS2CR8
NR4A1
HIRA
TLX2
SP140
HOXC11
SREBF1
REST
SPIB
LMX1A
PCGF2
FOXP4
ZNF197
ZNF483
TBX20
ZFHX2
GCM1
GSX1
POU2F1