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TCNG: The Cancer Network Galaxy

Tcng

TCNG The Cancer Network Galaxy 0.14

Database of Cancer Gene Networks from Public Gene Expression Data

Gene Set

GSE25055_top8000

Description	Discovery cohort for genomic predictor of response and survival following neoadjuvant taxane-anthracycline chemotherapy in breast cancer
Gene Set Method	Top 8000 high variable genes
Gene Set Source	GEO : GSE25055 (See on GEO)
Number of Nodes	8000

Network Nodes in the Gene Set

LOC100126583///IGHV3OR16-13///IGHA2///IGHA1///IGH@

LOC440871///IGK@///IGKV3-20///IGKV3D-11///IGKV3D-15///IGKC

LOC100134331///LOC100126583///LOC652128///LOC642131///VSIG6///IGHV4-31///IGHM///IGHG4///IGHG3///IGHG1///IGHD///IGHA2///IGHA1///IGH@

CYP2B7P1///CYP2B6

LOC100126583///LOC652494///IGHV4-31///IGHM///IGHG3///IGHG2///IGHG1///IGHA2///IGHA1///IGH@

IGHV4-31///IGHM///IGHG2///IGHG1///IGH@

LOC100126583///IGHV4-31///IGHV@///IGHM///IGHG3///IGHG1///IGHD///IGHA1

GUSBP3///SMA5///SMA4

NCF1C///NCF1B///NCF1

LOC642103///MGAM

IGHV4-31///IGHV@///IGHM///IGHG1///IGHD///IGHA1

IGLV2-14///IGLC2///IGL@

LOC652694///IGKV1-5///IGKC

IGLV2-11///IGLV2-18///IGLV2-23

MAGEA2B///MAGEA6///MAGEA3///MAGEA2

IGLV3-19///IGL@

PTPN20A///PTPN20B

MAGEA2B///MAGEA2

HIST1H2AH///HIST1H2AG///HIST1H2AM///HIST1H2AL///HIST1H2AJ///HIST1H2AK///HIST1H2AI

LOC100133862///IGHM

LOC652494///IGHM

LOC652494///IGHM///IGHG3///IGHG1///IGHA1

ZNF286B///FOXO3

MAGED4///MAGED4B

CDK11A///CDK11B

LOC652694///IGK@///IGKV1-5///IGKC

HIST2H4B///HIST4H4///HIST2H4A///HIST1H4L///HIST1H4E///HIST1H4B///HIST1H4H///HIST1H4C///HIST1H4J///HIST1H4K///HIST1H4F///HIST1H4D///HIST1H4A///HIST1H4I

HIST1H2AB///HIST1H2AE

LOC100133862///IGHG1///IGHA1

STON1-GTF2A1L///STON1///GTF2A1L

LGALS7B///LGALS7

HIST1H2BC///HIST1H2BI///HIST1H2BE///HIST1H2BF///HIST1H2BG

LOC100132941///LOC647224///IGHV3OR16-6

LOC642131///IGHV1OR21-1///IGHV4-31///IGHV7-81///IGHM///IGHG3///IGHG1///IGHA2///IGHA1///IGH@

SPANXB2///SPANXB1///SPANXF1

KRT6C///KRT6B///KRT6A

HIST1H3F///HIST1H3B///HIST1H3H///HIST1H3J///HIST1H3G///HIST1H3I///HIST1H3E///HIST1H3C///HIST1H3D///HIST1H3A///HIST1H2AD

AZGP1P1///AZGP1

LOC100288628///LOC727842

LOC440871///IGK@///IGKV3-20///IGKV3D-11///IGKV3D-15

LOC100126583///IGHV4-31///IGHV@///IGHM///IGHG3///IGHG2///IGHG1///IGHD///IGHA2///IGHA1///IGH@

ZNF780A///ZNF780B

HIST1H3D///HIST1H2AD

NUDT4P1///NUDT4

HLA-DQA2///HLA-DQA1

FCGR3B///FCGR3A

LOC131185///RAD23B

RPL5P1///RPL5P34///SNORA66///RPL5

LOC642131///IGHM///IGHG1///IGHA2///IGHA1///IGH@

DAZ4///DAZ2///DAZ3///DAZ1

CTAG1A///CTAG1B

PLGLB1///PLGLB2

DUX1///DUX3///DUX5

LOC100132247///LOC730153///LOC729978///LOC729602///LOC642799///LOC641298///NPIPL1///NPIPL3

LOC100132015///ODZ1///SH2D1A

CRYBB2P1///CRYBB2

ARL17B///ARL17A

LOC100126583///LOC652494///IGHM///IGHG3///IGHG2///IGHG1///IGHA1///IGH@

AMY2B///AMY2A///AMY1C///AMY1B///AMY1A

C12orf32///IGHG1

LOC645468///IGF2BP3

LOC391081///LOC128102///HSD3B2///HSD3B1

FABP5L2///FABP5L7///FABP5

LOC645749///EPM2A

LOC643916///RPL7P27

LOC100132942///TBCAP2///KAZ

LOC100133944///FCGBP

TUBB2B///TUBB2A

GAGE8///GAGE12F///GAGE2A///GAGE2D///GAGE12J///GAGE12G///GAGE2B///GAGE2E///GAGE12I///GAGE7///GAGE6///GAGE5///GAGE4///GAGE3///GAGE2C///GAGE1

KRTAP9-4///KRTAP9-9

CCDC73///RPL34P2

NCRNA00271///GAPDHL19

LOC100128414///RAD54B

LOC100132832///LOC441259///PMS2L12///PMS2///PMS2L3///PMS2L5///PMS2L2///PMS2L1

LILRA6///LILRB3

LOC100287328///RPS29P28

LOC100134331///LOC100126583///LOC652128///IGHG1///IGHD///IGH@

LOC653166///OR1D5///OR1D4

RPS21P7///C20orf30///SLC23A2

LOC203510///HMGB3

LOC100130100///LOC652694///LOC652493///LOC650405///IGKV1-5///IGKC

LOC652493///LOC650405///IGK@///IGKC

IGHV4-31///IGHV@///IGHM///IGHG1///IGHA1

IGHV4-31///IGHV@///IGHM///IGHG3///IGHG1///IGHA1

LOC100134331///LOC652128///VSIG6///IGHM///IGHD

TMSB15B///TMSB15A

LOC729162///LOC441528///LOC389906///LOC286434

SLC26A6///CELSR3

LOC100129013///SERBP1P1

NACA2///NACAP1///NACA

LOC100128935///CDC5L

RTEL1///TNFRSF6B

PPP1R2P4///C13orf18

PLA2G4B///JMJD7///JMJD7-PLA2G4B

LST-3TM12///SLCO1B3///SLCO1B1

TRAJ17///TRAV20///TRD@///TRA@

CELA2A///CELA2B

PRR5-ARHGAP8///PRR5///ARHGAP8

LOC100133811///LOC100133661///LOC731718///ZNF749///RNASE2///HLA-DRB5///HLA-DRB4///HLA-DRB3///HLA-DRB2///HLA-DRB1

DDX19A///DDX19B

HIST2H2AA4///HIST2H2AA3

SPANXB2///SPANXA2///SPANXB1///SPANXF1///SPANXC///SPANXA1

RNF11P2///MACROD2

SNRNP48///RPL29P1

MGC31957///TNFRSF10C

FAM153A///FAM153B

LOC730138///LOC391136///RPL4P3///VAMP4

IGLV2-11///IGLV2-18///IGLV2-23///IGLC1///IGL@

CYCSP33///PARP4

LOC723972///ANP32C///ANP32D///ANP32A

RPL29P17///MBOAT1

GOLGA8B///GOLGA8A

SSSCA1///LYPLA1

GAGE12D///GAGE12F///GAGE2A///GAGE12H///GAGE12E///GAGE12B///GAGE12C///GAGE12G///GAGE2B///GAGE2E///GAGE12I///GAGE7///GAGE6///GAGE5///GAGE4///GAGE2C

APOBEC3F///APOBEC3G

LOC729863///LOC729501///ZNF834

RPL21P64///EEF1DP5

TBC1D3H///TBC1D3///TBC1D3G///LOC653380///TBC1D3C///TBC1D3B///TBC1D3F

IGHV4-31///IGHV@///IGHM///IGHG3///IGHG1///IGHA2///IGHA1///IGH@

LOC729020///RPE

LOC100131795///NMNAT2

RPL29P7///SUMO1P2

LOC100134331///LOC100126583///LOC652128///VSIG6///IGHV4-31///IGHM///IGHG4///IGHG3///IGHG1///IGHD///IGHA2///IGHA1///IGH@

PCDHA1///PCDHA2///PCDHA3///PCDHA4///PCDHA5///PCDHA6///PCDHA7///PCDHA8///PCDHA10///PCDHA11///PCDHA12///PCDHA13///PCDHAC1///PCDHAC2///PCDHA9

INS-IGF2///IGF2

UGT1A9///UGT1A6///UGT1A8

FAM75A5///FAM75A3///FAM75A1///FAM75A4///FAM75A2///FAM75A6///FAM75A7

RPL7P12///RPL7P24///RPL7P20///RPL7P26///RPL7P23///RPL7P8///RPL7P48///RPL7

MAGEA9B///MAGEA9

LOC100133772///SLC16A5

LOC729978///LOC729602///NPIPL1///PDXDC2

LOC652494///IGHV4-31///IGHM///IGHG3///IGHG2///IGHG1///IGHD///IGHA1

SLC35E2///SLC35E2

CATSPER2P1///CATSPER2

THSD1P1///THSD1

PCDHGA3///PCDHGA5///PCDHGA6///PCDHGA10///PCDHGA11///PCDHGA12

TRAC///TRAJ17///TRAV20///TRA@

LOC653562///SLC6A10P///SLC6A8

LOC100134355///PRIM2

DEFA1B///DEFA3///DEFA1

LOC730755///KAP2.1B///KRTAP2-4

LOC100133811///LOC100133661///ZNF749///RNASE2///HLA-DRB5///HLA-DRB4///HLA-DRB3///HLA-DRB2///HLA-DRB1

RPL7P12///RPL7P32///RPL7P24///RPL7P20///RPL7P26///RPL7P23///RPL7P58///RPL7P8///RPL7P48///RPL7

LOC100288702///ACTR3P1///RPL4P1///TRA@///SALL2

LOC652637///WHAMML1

VDAC1P8///LOC100288558///ADAT2///PEX3///FUCA2

UGT2A2///UGT2A1

TRBC1///TRBC2///TRBV7-4///TRBV7-6///TRBV7-7///TRBV7-8

LOC100133977///LOC728410///LOC653548///LOC653545///LOC653544///LOC653543///HPX-2///LOC652291///LOC652119///LOC651709///LOC440014///DUX1///DUX3///DUX5///DUX4///ASMTL

LOC100133811///LOC100133661///ECRP///ZNF749///RNASE2///HLA-DRB5///HLA-DRB4///HLA-DRB3///HLA-DRB2///HLA-DRB1

GAGE12F///GAGE2A///GAGE12G///GAGE2B///GAGE2E///GAGE12I///GAGE7///GAGE4///GAGE2C

LOC646756///FOXRED2///TXN2///CACNG2///EIF3D

XAGE1B///XAGE1A///XAGE1E///XAGE1C///XAGE1D

COX6CP2///PTPN1

LOC100132247///NPIPL3

SPIN2B///SPIN2A

CCL3L3///CCL3L1///CCL3

LOC100131613///AHSG

LOC727787///KIR3DL2

RRN3P1///RRN3P2///RRN3

RRP7B///POLDIP3///RRP7A

TRAC///TRAJ17///TRAV20///TRD@///TRA@

RPL17P7///RPL17P18///RPL17P16///RPL17P36///RPL17P22///RPL17P39///RPL17P34///RPL17P25///RPL17

POLR2J3///POLR2J2///POLR2J4///POLR2J

UGT1A3///UGT1A1///UGT1A4///UGT1A9///UGT1A5///UGT1A6///UGT1A7///UGT1A8///UGT1A10

RBMY1J///RBMY1E///RBMY1D///RBMY1B///RBMY1F///RBMY3AP///RBMY1A1

LOC100132941///IGHG1

LOC100128334///AZGP1P1///ZKSCAN1///AZGP1

LOC649330///LOC440563///HNRNPCL1///HNRNPC

VCY1B///VCX3A///VCY

LOC100132832///LOC441259///PMS2L5///PMS2L2///PMS2L1

LRRC37A2///LRRC37A

CYP4F2///CYP4F3

TRIM6-TRIM34///TRIM6///TRIM34

LOC729222///PPFIBP1

KIR2DS2///KIR3DP1///LOC727787///KIR2DL5B///KIR3DP1///KIR3DL3///KIR2DL5A///KIR3DL2///KIR3DL1///KIR2DS5///KIR2DS4///KIR2DS3///KIR2DS1///KIR2DL3///KIR2DL2///KIR2DL1

SERPINB4///SERPINB3

ZNF259P1///ZNF259

LOC100128155///VAV2

CLCNKB///CLCNKA

LOC90925///IGHG1

LOC100133005///RASA4P///RASA4

CKMT1A///CKMT1B

LOC100289523///LOC392555

ACSM2B///ACSM2A

LOC642131///IGHG1

CXorf18///NDUFB3P5

LOC100128836///LOC730246///LOC729366///LOC729102///LOC728732///LOC728643///LOC728170///HNRPA1P5///HNRPA1L-2///LOC645001///LOC644037///LOC642817///LOC440125///LOC402112///LOC391670///HNRNPA1L2///LOC120364///HNRNPA1

RPL10P15///RPL10P8///RPL10P6///RPL10P16///RPL10

SERINC2///SEL1L3

KIAA1659///MKL1///COX6B1P3

FLJ23519///RNH1

LOC100134331///LOC100126583///LOC652128///VSIG6///IGHM///IGHG1///IGHA2///IGHA1///IGH@

PCDH11Y///PCDH11X

PPIAL4C///PPIAL4B///PPIAL4G///PPIAL4A

RPL21P80///RPL21P87///RPL21P37///RPL21P18///RPL21P16///RPL21P14///RPL21P134///RPL21P45///RPL21P119///RPL21P93///RPL21P98///RPL21P82///RPL21P46///RPL21P61///RPL21P69///RPL21P19///RPL21P62///RPL21P29///RPL21P44///RPL21P39///RPL21P97///RPL21

LOC652694///IGK@///IGKC

HIST2H3PS2///HIST1H2BN///HIST1H2BL

LOC100287993///FRG1B

FAM153C///FAM153A///FAM153B

CDY1B///CDY2B///CDY2A///CDY1

IGLL5///LOC100287927

SLC2A14///SLC2A3

BTN3A2///BTN3A3

MMP23A///MMP23B

KIR3DS1///KIR3DL1

LOC100132540///LOC339047///NPIP

GAGE12D///GAGE8///GAGE12F///GAGE2A///GAGE12H///GAGE12E///GAGE12B///GAGE12C///GAGE2D///GAGE12J///GAGE12G///GAGE2B///GAGE2E///GAGE12I///GAGE7///GAGE6///GAGE5///GAGE4///GAGE2C///GAGE1

HLA-J///HLA-H///HLA-G///HLA-B///HLA-A

RPL37P21///LOC100131269

RPL18AP3///RPL18AP6///RPL18A

HNRNPA3///HNRNPA3P1

FOXD4L1///FOXD4

OR2A9P///OR2A20P///OR2A5

KCNJ18///LOC100131509///KCNJ12

ANXA8L1///ANXA8///ANXA8L2

LOC100289473///LOC441938///SIRPG

POU5F1P4///POU5F1P3///POU5F1B///POU5F1

LOC728683///LOC442421

LOC100132773///LOC100131868///LOC100129064///PPP4R2

LOC645529///ACR

LOC652346///PML

LOC728636///LOC643696///GOLGA6L9///GOLGA6L5

CGB8///CGB7///CGB5///CGB

LOC650293///UNC93B4///UNC93B2///LOC442381///OR7E125P///OR7E37P///OR7E87P

LOC100134209///IQSEC3

LOC652993///PHLDA1

SYS1-DBNDD2///DBNDD2

METTL2A///METTL2B

LOC729234///FAHD2B///FAHD2A

PA2G4P4///PA2G4

FLJ41278///TBC1D30

CSNK2A1P///CSNK2A1

IGHV4-31///IGHM///IGHG3///IGHG1///IGHD///IGHA1///IGH@

LOC654056///SIRPB1

GPR89C///GPR89A///GPR89B

H2AFB1///H2AFB2///H2AFB3

HSPA1B///HSPA1A

LOC100133005///LOC100132214///RASA4

LOC729602///LOC642799///NPIPL3

RFPL1S///RFPL3S

GAGE12F///GAGE2A///GAGE12J///GAGE12G///GAGE2B///GAGE2E///GAGE12I///GAGE7///GAGE6///GAGE5///GAGE4///GAGE2C///GAGE1

GABARAPL3///GABARAPL1

GH1///CSH2///CSH1

RABL2A///RABL2B

ZNF37B///ZNF37A

LOC100132247///LOC613037///NPIPL3

GTSF1L///RPL27AP///IFT52///MYBL2

MT1P2///MT1M///MT1H///MT1E

LOC644397///LRRC37A2///LRRC37A3///LRRC37A4///LRRC37A

KIAA0913///SAT1

LOC729353///LOC727849///LOC727751///LOC388152///LOC80154

LOC730909///LOC390561

SSX10///SSX2B///SSX9///SSX7///SSX3///SSX5///SSX2///SSX1

SERF1B///SERF1A

PALM2-AKAP2///PALM2///AKAP2

LOC440248///HERC2P2///HERC2P3

UGT1A6///UGT1A7///UGT1A8///UGT1A10

LOC100128011///MIR622///KRT18P27

LOC100128836///LOC100128701///LOC730246///LOC729366///LOC729102///LOC728732///LOC728643///LOC728170///HNRPA1P5///HNRPA1L-2///LOC645001///LOC644037///LOC642817///LOC440125///LOC402112///LOC391670///HNRNPA1L2///LOC120364///HNRNPA1

LOC595101///BOLA2///LOC440354

LOC730031///MLLT4

LOC650293///UNC93B2///OR7E87P

GOLGA8DP///GOLGA8F///GOLGA8C///GOLGA8E///GOLGA8G

TCNG DB 0.14 Wed Mar 30 15:00:31 2016 JST ©2013, 2016 SiGN Project Members. Website: http://sign.hgc.jp